Yang et al., 2017 Data for PVP deleterious alleles

Data described here is associated with the Yang et al., 2017, PLOS Genetics. The data types in this directory tree are: GERP annotation data, bam and SNP data, and ReadMe text file. For sequencing, we extracted DNA from the 12 inbred lines (See SRA_metadata_acc_inbred12) and sheared the DNA on a Covaris (Woburn, Massachusetts) for library preparation. Libraries were prepared using an Illumina paired-end protocol with 180 bp fragments and sequenced using 100 bp paired-end reads on a HiSeq 2000. Raw sequencing data are available at NCBI SRA (PRJNA381642). Please refer Yang et al., 2017 for more details about read mapping, SNP calling and GERP annotation.

Data and Resources

Additional Info

Field Value
Author Jinliang Yang
Last Updated September 10, 2026, 18:02 (UTC)
Published April 8, 2026, 06:55 (UTC)
Citation Jinliang Yang 2017. Yang et al., 2017 Data for PVP deleterious alleles. CyVerse Data Commons. DOI 10.7946/P2WS60
alternateIdentifier /b7946/p2ws60
compressed_data false
de_created_date 2016-04-06T17:47:26Z
de_modified_date 2020-02-20T22:05:33Z
identifierType DOI
is_deprecated false
publisher CyVerse Data Commons
relatedIdentifier PRJNA381642
resourceType annotation data