deprecated_Dysregulation of expression correlates with rare-allele burden and fitness loss in maize - data

Data in this directory is associated with Kremling et al., 2018, Nature. The data types in this directory tree are the matrix of gene expression counts of an average of 255 maize taxa in seven tissues at different steps of processing, SNP data, and phenotypic data for all the taxa. For the RNA data, tissues were pooled from three plants, extracted and libraries were made using the Lexogen QuantSeq FWD kit. They were then sequenced at 96 plex on the NextSeq500. Additional details can be found in the manuscript. Sequence data that support the findings of this study have been deposited in the SRA under SRP115041/PRJNA383416 at https://www.ncbi.nlm.nih.gov/bioproject/383416. All code used to generate the counts and figures in the paper is publicly available https://bitbucket.org/bucklerlab/expn_rare_alleles

Data and Resources

Additional Info

Field Value
Author Karl Kremling
Last Updated September 10, 2026, 18:02 (UTC)
Published April 8, 2026, 06:55 (UTC)
Citation Karl Kremling 2019. deprecated_Dysregulation of expression correlates with rare-allele burden and fitness loss in maize - data. CyVerse Data Commons. DOI 10.25739/3ph0-x861
analysis_tool https://bitbucket.org/bucklerlab/expn_rare_alleles
compressed_data true
contributor Cinta Romay
de_created_date 2017-04-18T19:47:58Z
de_modified_date 2020-02-20T22:05:33Z
fundingReference This work was supported by the USDA–ARS and the NSF grants IOS-0922493 and IOS-1238014, the NSF GRF DGE-1650441, and the Section of Plant Breeding and Genetics at Cornell University 
identifierType DOI
is_deprecated true
publisher CyVerse Data Commons
relatedIdentifier https://www.ncbi.nlm.nih.gov/bioproject/383416, 10.1038/nature25966, https://bitbucket.org/bucklerlab/expn_rare_alleles, 10.25739/16zy-0j54
resourceType RNA counts, Phenotypes, Genotypes